PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001948.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family FAR1
Protein Properties Length: 305aa    MW: 34057.4 Da    PI: 9.5128
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001948.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.62.7e-2060154186
         FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                  kfYn+YA ++GFs+rk++++k  k+++ it+ t++Csk g++++++++         t++ ++  ++ rt+Cka++++k +++gkw++t + l Hn
  Aco001948.1  60 KFYNDYAFKMGFSIRKQTHYKArKQDDAITSITYCCSKAGNSKPTSQEkseqqnsqgTHTPQKDFPNRRTNCKAHIVLKIDDRGKWVIT-IPLTHN 154
                  6*******************99678899**************9999887777777766666678899*******************886.566666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-1860154IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEHGSIIGSS VSMSNLDVRD EVNEEIGKIV ANDHTSNVSK YPVDEIRVGL EFTCIEDAKK  60
FYNDYAFKMG FSIRKQTHYK ARKQDDAITS ITYCCSKAGN SKPTSQEKSE QQNSQGTHTP  120
QKDFPNRRTN CKAHIVLKID DRGKWVITIP LTHNVKDEED PKGLSHPSKR KQGCQELASN  180
VGPLNSKRLL NPKEIAIIPT VQFLIQGPKS RKYQVLYTSD SIVALHLNYY NAIGSCSSYV  240
WSSQLDGHAL QQLIWSVRGA KPLPRSSTAS LGPGSKKWWS ENYKKFLVGS TADPADFFTR  300
SNQA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6621591e-36KM662159.1 Ananas bracteatus clone 45604 microsatellite sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.12e-10FAR1-related sequence 12